After GitHub converts Markdown to HTML,
The HTML is sanitized, aggressively removing things that could harm you and your kin—such as
scripttags, inline-styles, andclassoridattributes. See the sanitization filter for the full whitelist.
You’re right: style tags are not included in the whitelist. They are ignored.
The permitted attributes differ by tag. I recommend referring to the sanitization filter link above. It leads to a fairly readable Ruby source file.