correlation
Python pandas returns empty correlation matrix
As Jeff mentioned in the comments, the problem resulted from my columns having the object dtype. For future reference, even if the object looks numeric, check the dtype and make sure it is numeric (e.g. do foo.astype(float)) before computing the correlation matrix.
How to visualize correlation matrix as a schemaball in Matlab
Kinda finished I guess.. code can be found here at github. Documentation is included in the file. The yellow/magenta color (for positive/negative correlation) is configurable, as well as the fontsize of the labels and the angles at which the labels are plotted, so you can get fancy if you want and not distribute them evenly … Read more
Pandas Correlation Groupby
You pretty much figured out all the pieces, just need to combine them: >>> df.groupby(‘ID’)[[‘Val1′,’Val2′]].corr() Val1 Val2 ID A Val1 1.000000 0.500000 Val2 0.500000 1.000000 B Val1 1.000000 0.385727 Val2 0.385727 1.000000 In your case, printing out a 2×2 for each ID is excessively verbose. I don’t see an option to print a scalar correlation … Read more
Cross-correlation (time-lag-correlation) with pandas?
As far as I can tell, there isn’t a built in method that does exactly what you are asking. But if you look at the source code for the pandas Series method autocorr, you can see you’ve got the right idea: def autocorr(self, lag=1): “”” Lag-N autocorrelation Parameters ———- lag : int, default 1 Number … Read more
Correlation heatmap
Another alternative is to use the heatmap function in seaborn to plot the covariance. This example uses the Auto data set from the ISLR package in R (the same as in the example you showed). import pandas.rpy.common as com import seaborn as sns %matplotlib inline # load the R package ISLR infert = com.importr(“ISLR”) # … Read more
How to calculate correlation between all columns and remove highly correlated ones using pandas?
The method here worked well for me, only a few lines of code: https://chrisalbon.com/machine_learning/feature_selection/drop_highly_correlated_features/ import numpy as np # Create correlation matrix corr_matrix = df.corr().abs() # Select upper triangle of correlation matrix upper = corr_matrix.where(np.triu(np.ones(corr_matrix.shape), k=1).astype(np.bool)) # Find features with correlation greater than 0.95 to_drop = [column for column in upper.columns if any(upper[column] > 0.95)] … Read more