Python – Move and overwrite files and folders

This will go through the source directory, create any directories that do not already exist in destination directory, and move files from source to the destination directory:

import os
import shutil

root_src_dir="Src Directory\\"
root_dst_dir="Dst Directory\\"

for src_dir, dirs, files in os.walk(root_src_dir):
    dst_dir = src_dir.replace(root_src_dir, root_dst_dir, 1)
    if not os.path.exists(dst_dir):
        os.makedirs(dst_dir)
    for file_ in files:
        src_file = os.path.join(src_dir, file_)
        dst_file = os.path.join(dst_dir, file_)
        if os.path.exists(dst_file):
            # in case of the src and dst are the same file
            if os.path.samefile(src_file, dst_file):
                continue
            os.remove(dst_file)
        shutil.move(src_file, dst_dir)

Any pre-existing files will be removed first (via os.remove) before being replace by the corresponding source file. Any files or directories that already exist in the destination but not in the source will remain untouched.