You can use normpath, realpath or abspath:
import os
goal_dir = os.path.join(os.getcwd(), "../../my_dir")
print goal_dir # prints C:/here/I/am/../../my_dir
print os.path.normpath(goal_dir) # prints C:/here/my_dir
print os.path.realpath(goal_dir) # prints C:/here/my_dir
print os.path.abspath(goal_dir) # prints C:/here/my_dir