A command line git has been integrated into Spyder.
https://github.com/spyder-ide/spyder/issues/6105
First right click the tab corresponding to any file in your repository and click “set console working directory.”
Then go to the Ipython window in Spyder and simply type your git commands (assuming Git is installed and its paths are configured properly) but append a “!” to the beginning of your command:
!git add "file.py" !git commit -m "My commit" !git push origin master