You should be able to stop / resume these threads by calling the onPause / onResume on the webview.
Those are however hidden, so you will need to do it through reflection. The following code worked for me:
Class.forName("android.webkit.WebView").getMethod("onPause", (Class[]) null).invoke(webView, (Object[]) null);
Where webView is the instance of WebView.
Also see: http://code.google.com/p/android/issues/detail?id=10282