Upload folder with subfolders using S3 and the AWS console

I suggest you to use AWS CLI. As it is very easy using command line and awscli

    aws s3 cp SOURCE_DIR s3://DEST_BUCKET/ --recursive

or you can use sync by

    aws s3 sync SOURCE_DIR s3://DEST_BUCKET/

Remember that you have to install aws cli and configure it by using your Access Key ID and Secrect Access Key ID

     pip install --upgrade --user awscli   
     aws configure