You could use the globalOperationParametersin the docket definition. For e.g.
new Docket(...)
.globalOperationParameters(
Arrays.asList(new ParameterBuilder()
.name("header")
.description("Description of header")
.modelRef(new ModelRef("string"))
.parameterType("header")
.required(true)
.build()))
See #22 in the documentation for more information.