There is whitespace control in Jinja2. You might want:
{%- set ip = grains['ip4_interfaces']['eth1'][0] -%}
{%- set domain = pillar['company_domain'] -%}
{%- set version = pillar['site_version'] -%}
{%- set site_url="www." + domain -%}
[...]
As well, the salt configuration file supports jinja_trim_blocks and jinja_lstrip_blocks (jinja_env:trim_blocks, jinja_env:lstrip_blocks, jinja_sls_env:trim_blocks, and jinja_sls_env:lstrip_blocks as of 2018.3).