Python: Differentiating between row and column vectors

You can make the distinction explicit by adding another dimension to the array.

>>> a = np.array([1, 2, 3])
>>> a
array([1, 2, 3])
>>> a.transpose()
array([1, 2, 3])
>>> a.dot(a.transpose())
14

Now force it to be a column vector:

>>> a.shape = (3,1)
>>> a
array([[1],
       [2],
       [3]])
>>> a.transpose()
array([[1, 2, 3]])
>>> a.dot(a.transpose())
array([[1, 2, 3],
       [2, 4, 6],
       [3, 6, 9]])

Another option is to use np.newaxis when you want to make the distinction:

>>> a = np.array([1, 2, 3])
>>> a
array([1, 2, 3])
>>> a[:, np.newaxis]
array([[1],
       [2],
       [3]])
>>> a[np.newaxis, :]
array([[1, 2, 3]])