You can put them in separate namespaces, e.g MyApp.Controllers.UsersController and MyApp.Controllers.WebAPI.UsersController.
This would let you expose similar URI routes in MVC and WebAPI, eg:
/users/1 << MVC view
/api/users/1 << Web API
You can put them in separate namespaces, e.g MyApp.Controllers.UsersController and MyApp.Controllers.WebAPI.UsersController.
This would let you expose similar URI routes in MVC and WebAPI, eg:
/users/1 << MVC view
/api/users/1 << Web API