As documented in the Plugins section of the pom reference:
Beyond the standard coordinate of groupId:artifactId:version, there are elements which configure the plugin or this builds interaction with it.
- inherited: true or false, whether or not this plugin configuration should apply to POMs which inherit from this one.
So just add <inherited>false</inherited> to the buildnumber-maven-plugin configuration to avoid inheritance in children POMs:
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>buildnumber-maven-plugin</artifactId>
<version>1.0-beta-3</version>
<inherited>false</inherited>
...
</plugin>