I had the same problem even when I created a fresh project.
I was creating the Java project within Eclipse, then mavenize it, then going into java build path properties removing src/ and adding src/main/java and src/test/java. When I run Maven update it used to give nested path error.
Then I finally realized -because I had not seen that entry before- there is a <sourceDirectory>src</sourceDirectory> line in pom file written when I mavenize it. It was resolved after removing it.