One can solve the problem by usage of dotnet ef dbcontext scaffold command with multiple -t (--table) parameters. It allows to specify all the tables, which needed by imported (scaffolded). The feature is described initially here.
It is possible to specify the exact tables in a schema to use when scaffolding database and to omit the rest. The command-line examples that follow show the parameters needed for filtering tables.
.NET Core CLI:
dotnet ef dbcontext scaffold
"server=localhost;port=3306;user=root;password=mypass;database=sakila"
MySql.Data.EntityFrameworkCore -o sakila
-t actor -t film -t film_actor -t language -f
Package Manager Console in Visual Studio:
Scaffold-DbContext "server=localhost;port=3306;user=root;password=mypass;database=sakila"
MySql.Data.EntityFrameworkCore -OutputDir Sakila
-Tables actor,film,film_actor,language -f