Best practice to mark deprecated code in Ruby?

For almost all cases, depending on a library or metaprogramming for a deprecation is overkill. Just add a comment to the rdoc and call the Kernel#warn method. For example:

class Foo
  # <b>DEPRECATED:</b> Please use <tt>useful</tt> instead.
  def useless
    warn "[DEPRECATION] `useless` is deprecated.  Please use `useful` instead."
    useful
  end

  def useful
    # ...
  end
end

If you’re using Yard instead of rdoc, your doc comment should look like this:

# @deprecated Please use {#useful} instead

Lastly, if you adhere to tomdoc, make your comment look like this:

# Deprecated: Please use `useful` instead

Deprecated: Indicates that the method is deprecated and will be removed in a future version. You SHOULD use this to document methods that were Public but will be removed at the next major version.

Also, don’t forget to remove the deprecated method in some future (and properly semver’d) release. Don’t make the same mistakes that the Java libraries did.