You can remove child elements with the according remove method. To remove an element you have to call its parents remove method. Unfortunately Element does not provide a reference to its parents, so it is up to you to keep track of parent/child relations (which speaks against your use of elem.findall())
A proposed solution could look like this:
root = elem.getroot()
for child in root:
if child.name != "prop":
continue
if True:# TODO: do your check here!
root.remove(child)
PS: don’t use prop.attrib.get(), use prop.get(), as explained here.