Pandas ParserError EOF character when reading multiple csv files to HDF5

I had a similar problem. The line listed with the 'EOF inside string' had a string that contained within it a single quote mark ('). When I added the option quoting=csv.QUOTE_NONE it fixed my problem.

For example:

import csv
df = pd.read_csv(csvfile, header = None, delimiter="\t", quoting=csv.QUOTE_NONE, encoding='utf-8')