I’ve also used code from here: http://kk-medienreich.at/techblog/magento-bootstrap-integration-mit-prototype-framework but without a need to modify any source. Just put code below somewhere after prototype and jquery includes:
(function() {
var isBootstrapEvent = false;
if (window.jQuery) {
var all = jQuery('*');
jQuery.each(['hide.bs.dropdown',
'hide.bs.collapse',
'hide.bs.modal',
'hide.bs.tooltip',
'hide.bs.popover',
'hide.bs.tab'], function(index, eventName) {
all.on(eventName, function( event ) {
isBootstrapEvent = true;
});
});
}
var originalHide = Element.hide;
Element.addMethods({
hide: function(element) {
if(isBootstrapEvent) {
isBootstrapEvent = false;
return element;
}
return originalHide(element);
}
});
})();