Thanks for the suggestions. I finally found a solution to this problem after reading this. It turns out that these dependencies were coming from a dependency to ZooKeeper.
I modified my pom.xml as following and it solved the problem:
<dependency>
<groupId>org.apache.zookeeper</groupId>
<artifactId>zookeeper</artifactId>
<version>3.3.2</version>
<exclusions>
<exclusion>
<groupId>com.sun.jmx</groupId>
<artifactId>jmxri</artifactId>
</exclusion>
<exclusion>
<groupId>com.sun.jdmk</groupId>
<artifactId>jmxtools</artifactId>
</exclusion>
<exclusion>
<groupId>javax.jms</groupId>
<artifactId>jms</artifactId>
</exclusion>
</exclusions>
</dependency>