In my server I had to
var io = require('socket.io')(httpServer, {path: '/mysubdir/socket.io'})`
In my client I had to
<script src="http://www.example.com/mysubdir/socket.io/socket.io.js"></script>
and also
var socket = io.connect('http://www.example.com', {path: "/mysubdir/socket.io"});`