How do I configure emacs for editing HTML files that contain Javascript?

Another solution is multi-web-mode:

https://github.com/fgallina/multi-web-mode

which may be more easily configurable than the already mentioned multi-mode.

You just configure your preferred modes in your .emacs file like this:

(require 'multi-web-mode)
(setq mweb-default-major-mode 'html-mode)
(setq mweb-tags 
  '((php-mode "<\\?php\\|<\\? \\|<\\?=" "\\?>")
    (js-mode  "<script[^>]*>" "</script>")
    (css-mode "<style[^>]*>" "</style>")))
(setq mweb-filename-extensions '("php" "htm" "html" "ctp" "phtml" "php4" "php5"))
(multi-web-global-mode 1)

More on Emacs’s multiple multiple modes (sigh) here:

http://www.emacswiki.org/emacs/MultipleModes

UPDATE: simplified the regexps to detect JavaScript or CSS areas to make them work with HTML5 — no need for super-precise and fragile regular expressions.

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