getExtra from Intent launched from a pendingIntent

If you change the Extra’s value in the intent, then while creating the pending intent you should use the flag PendingIntent.FLAG_CANCEL_CURRENT.

A simple example would be

PendingIntent pi = PendingIntent.getBroadcast(context, 0,intentWithNewExtras,PendingIntent.FLAG_CANCEL_CURRENT);

This is the right way and will ensure that your new values are delivered.

Hope it helps.