Eclipse’s Package explorer background color follows windows theme. I want to change the color without changing windows’ theme. Possible?

Install the “Eclipse 4 Chrome Theme” from
http://marketplace.eclipse.org/content/eclipse-4-chrome-theme

Then you can customize a lot of the Eclipse UI widgets.
But not what you want, at least not out of the box.
For that you should go to the CSS tab (in Eclipse 4 Chrome Theme) and paste this:

Tree, List, Table {
  background-color: #202020;
  color: #d0d0d0;
}

You can change almost anything, the problem is finding out what, and the fact that some things are bitmaps that you can’t change (so if the bitmap is dark and you set a dark background you will “loose” the bitmap)

This list of widgets might help, http://download.eclipse.org/rt/rap/doc/1.5/help/html/reference/theming/index.html but they give you generic info on the widget names, not the Eclipse info (with IDs and all), so be careful 🙂

== Very late addition ==

Everything you need in one place, including links to a custom dark theme: http://mihai-nita.net/2013/09/19/dark-eclipse/

Mac Screen Shot Example as of Sept 2013 (please be sure to restart Eclipse after changing file):

enter image description here

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