Count distinct values with OVER(PARTITION BY id)

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No, as the error message states, DISTINCT is not implemented with windows functions. Aplying info from this link into your case you could use something like:

WITH uniques AS (
 SELECT congestion.id_element, COUNT(DISTINCT congestion.week_nb) AS unique_references
 FROM congestion
WHERE congestion.date >= '2014.01.01'
AND congestion.date <= '2014.12.31'
 GROUP BY congestion.id_element
)

SELECT congestion.date, congestion.week_nb, congestion.id_congestion,
   congestion.id_element,
ROW_NUMBER() OVER(
    PARTITION BY congestion.id_element
    ORDER BY congestion.date),
uniques.unique_references AS week_count
FROM congestion
JOIN uniques USING (id_element)
WHERE congestion.date >= '2014.01.01'
AND congestion.date <= '2014.12.31'
ORDER BY id_element, date

Depending on the situation you could also put a subquery straight into SELECT-list:

SELECT congestion.date, congestion.week_nb, congestion.id_congestion,
   congestion.id_element,
ROW_NUMBER() OVER(
    PARTITION BY congestion.id_element
    ORDER BY congestion.date),
(SELECT COUNT(DISTINCT dist_con.week_nb)
    FROM congestion AS dist_con
    WHERE dist_con.date >= '2014.01.01'
    AND dist_con.date <= '2014.12.31'
    AND dist_con.id_element = congestion.id_element) AS week_count
FROM congestion
WHERE congestion.date >= '2014.01.01'
AND congestion.date <= '2014.12.31'
ORDER BY id_element, date

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