Navigation controller top layout guide not honored with custom transition

Managed to fix my issue by adding this line:

toViewController.view.frame = [transitionContext finalFrameForViewController:toViewController];

To:

- (void)animateTransition:(id<UIViewControllerContextTransitioning>)transitionContext fromVC:(UIViewController *)fromVC toVC:(UIViewController *)toVC fromView:(UIView *)fromView toView:(UIView *)toView {

    // Add the toView to the container
    UIView* containerView = [transitionContext containerView];
    [containerView addSubview:toView];
    [containerView sendSubviewToBack:toView];


    // animate
    toVC.view.frame = [transitionContext finalFrameForViewController:toVC];
    NSTimeInterval duration = [self transitionDuration:transitionContext];
    [UIView animateWithDuration:duration animations:^{
        fromView.alpha = 0.0;
    } completion:^(BOOL finished) {
        if ([transitionContext transitionWasCancelled]) {
            fromView.alpha = 1.0;
        } else {
            // reset from- view to its original state
            [fromView removeFromSuperview];
            fromView.alpha = 1.0;
        }
        [transitionContext completeTransition:![transitionContext transitionWasCancelled]];
    }];

}

From Apple’s Documentation for [finalFrameForViewController] : https://developer.apple.com/library/ios/documentation/UIKit/Reference/UIViewControllerContextTransitioning_protocol/#//apple_ref/occ/intfm/UIViewControllerContextTransitioning/finalFrameForViewController: